PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004948
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 184aa    MW: 20710.2 Da    PI: 9.5091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-119712PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +v+++G g+W+ I +          R+  ++k++w++
        Sof004948  5 KQRWTSEEEAALRAGVARHGVGNWRMILNDPElsstlRYRSNVDLKDKWRN 55
                     79****************************9999**999***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.494161IPR017930Myb domain
SuperFamilySSF466891.22E-15258IPR009057Homeodomain-like
SMARTSM007171.0E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-13556IPR009057Homeodomain-like
PfamPF002492.8E-7556IPR001005SANT/Myb domain
CDDcd116602.55E-20657No hitNo description
SuperFamilySSF467852.18E-11121183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-13121183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005260.0011122183IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150415.881124184IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-7125183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGV ARHGVGNWRM ILNDPELSST LRYRSNVDLK DKWRNMNVIV  60
TSSSARDRGR TSTRRTRAAP KNNDHSLALS TVTSDVDDEI VDVNPIPIAS MPVEAWNTSN  120
SKKSHSRLDN IIMEAIKNLN EPTGSHRTTM ANYIEEQYWP PSDFDHLWSA KLKDLPTNGN  180
IVKG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457295.11e-106hypothetical protein SORBIDRAFT_03g005080
SwissprotQ6WLH31e-106SMH5_MAIZE; Single myb histone 5
TrEMBLC5XP521e-106C5XP52_SORBI; Putative uncharacterized protein Sb03g005080
STRINGSb03g005080.11e-105(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-48telomere repeat binding factor 1